• Whole Genome Sequencing : Re-sequencing or de novo
  • Amplicon sequencing
  • 16S Metagenomics
    • Ion Torrent PGM: Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota.
      Audebert C., Even G., Amandine Cian, The Blastocystis Investigation Group, Loywick A., Merlin S., Viscogliosi E. & Chabé M.
      Scientific Reports, 2016 May
    • Illumina MiSeq: Mussel biofiltration effects on attached bacteria and unicellular eukaryotes in fish-rearing seawater.
      Voudanta1 E., Ar Kormas​ K., Monchy S., Delegrange A., Vincent D., Genitsaris S., Christaki U.
      PeerJ 2016 March (Genes Diffusion built the MiSeq sequencing libraries, as mentioned in the Materials and Methods section)


  • RNA-seq (transcriptomic studies) on bacteria and eukarya
  • dRNA-seq (primary transcriptome analysis (TSS)) on bacteria


  • Single-cell RNA-seq on eukarya
  • Microarrays

Transcriptomic studies on microarrays

  • miRNA expression
  • SNPs genotyping


  • Microbial genome characterization from NGS data
  • RNA-seq data analysis
  • 16S metagenomics data analysis
  • Differential expression analysis (DE) on microarrays data
  • GWAS analysis