2014 Published articles
• High-Throughput Sequencing, a Versatile Weapon to Support Genome-Based Diagnosis in Infectious Diseases: Applications to Clinical Bacteriology.
Caboche S, Audebert C, Hot D
Pathogens 2014 2 Apr 2, 3, 258-279
• Cryptosporidium parvum-induced ileo-caecal adenocarcinoma and WNT signaling in a rodent model.
Benamrouz S, Conseil V, Chabe M, Praet M, Audebert C, Blervaque R, Guyot K, Gazzola S, Mouray A, Chassat T, Delaire B, Goetinck N, Gantois N, Osman M, Slomianny C, Dehennaut V, Lefebvre T, Viscogliosi E, Cuvelier C, Dei-Cas E, Creusy C, Certad G.
Dis Model Mech. 2014 Mar 2
• Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data.
Caboche S, Audebert C, Lemoine Y, Hot D
BMC Genomics. 2014 Apr 5;15(1):264
• Monitoring of four DNA extraction methods upstream of high-throughput sequencing of Anisakidae nematodes.
Seesao Y, Audebert C, Verrez-Bagnis V, Merlin S, Jérôme M, Viscogliosi E, Dei-Cas E, Aliouat-Denis CM, Gay M.
J Microbiol Methods. 2014 May 15, pii: S0167-7012(14)00125-0
• An improved single-round PCR leads to rapid and highly sensitive detection of Pneumocystis spp.
Chabé M, Khalife S, Gantois N, Even G, Audebert C
Med Mycol. 2014 Nov 1;52(8):841-6. doi: 10.1093/mmy/myu032. Epub 2014 Jun 25.
• Le séquençage haut-débit – Vers un diagnostic basé sur la séquence complète du génome de l’agent infectieux (High-throughput sequencing: towards a genome-based diagnosis in infectious diseases)
Audebert C,Hot D, Lemoine Y and Caboche S
Med Sci (Paris). 2014 Dec;30(12):1144-51
2014 Oral communications
• Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data
Authors: Ségolène Caboche, Christophe Audebert, Yves Lemoine and David Hot
Presenter: Ségolène Caboche
Conference: ECCB’14, the 13th European Conference on Computational Biology (highlight paper)
2014 Posters
• ECCB 2014 :
• EMBO 2014 :
